SELECT 
  a.modifier, 
  a.modifier_type, 
  a.variant_id 
FROM 
  cscart_product_option_variants a 
WHERE 
  1 
  AND a.variant_id IN (5652)

Query time 0.00029

JSON explain

{
  "query_block": {
    "select_id": 1,
    "table": {
      "table_name": "a",
      "access_type": "const",
      "possible_keys": ["PRIMARY"],
      "key": "PRIMARY",
      "key_length": "3",
      "used_key_parts": ["variant_id"],
      "ref": ["const"],
      "rows": 1,
      "filtered": 100
    }
  }
}